A Minimal Book Example
1
Preface
2
Introduction
2.1
General Structure: R Syntax
2.1.1
Step 1: Load Libraries
2.1.2
Step 2: Import Data
2.1.3
Step 3: Check and update data
2.1.4
Step 4. Explore data
2.1.5
Step 5. Specify a model for data
2.1.6
Step 6. Check the model
2.1.7
Step 7. Interpret the model
2.1.8
Step 8. Present the results from the model
2.2
General Structure: Explanation of Each Step
2.2.1
Step 1: Load Libraries
2.2.2
Step 2: Import Data
2.2.3
Step 3: Check and update data
2.2.4
Step 4. Explore data
2.2.5
Step 5. Specify a model for data
2.2.6
Step 6. Check the model
2.2.7
Step 7. Interpret the model
2.2.8
Step 8. Present the results from the model
2.3
Other resources
3
Randomised Complete Block Design (RCBD)
3.1
About the data
3.2
Section 1: Steps in analysis using R
3.3
Section 2: Explanation of Steps
3.3.1
1. Install R packages needed
3.3.2
2. Import data
3.3.3
3. Check and update data
3.3.4
4. Explore data
3.3.5
5. Specify a model for data
3.3.6
6. Check the model
3.3.7
7. Interpret Model
3.3.8
8. Present the results from the model
3.4
Section 3 – Methodological Principles
4
Split Plot Designs
4.1
About the data
4.2
Section 1: Steps in analysis using R
4.3
Section 2: Explanation of Steps
4.3.1
1. Install R packages needed
4.3.2
2. Import data
4.3.3
3. Check and update data
4.3.4
4. Explore data
4.3.5
Plots
4.3.6
Summary Statistics
4.3.7
5. Specify a model for data
4.3.8
6. Check the model
4.3.9
7. Interpret Model
4.3.10
8. Present the results from the model
4.4
Section 3 – Methodological Principles
5
Adjusting for Covariates
5.1
About the data
5.2
Section 1: Steps in analysis using R
5.3
Section 2: Explanation of Steps
5.3.1
1. Install R packages needed
5.3.2
2. Import data
5.3.3
3. Check and update data
5.3.4
4. Explore data
5.3.5
5. Specify a model for data
5.3.6
6. Check the model
5.3.7
7. Interpret Model
5.3.8
8. Present the results from the model
5.4
Section 3 – Methodological Principles
6
Relay Planting Example
6.1
Section 1: Steps in analysis using R
6.2
Section 2: Explanation of Steps
6.2.1
1. Install R packages needed
6.2.2
2. Import data
6.2.3
3. Check and update data
6.2.4
4. Explore data
6.2.5
5. Specify a model for data
6.2.6
6. Check the model
6.2.7
7. Interpret Model
6.2.8
8. Present the results from the model
6.3
Section 3 – Methodological Principles
7
Multi-Environment Trial Analysis
7.1
Section 1: Steps in analysis using R
7.2
Section 2: Explanation of Steps
7.2.1
1. Install R packages needed
7.2.2
2. Import data
7.2.3
3. Check and update data
7.2.4
4. Explore data
7.2.5
5. Specify a model for data
7.2.6
6. Check the model
7.2.7
7. Interpret Model
7.2.8
8. Present the results from the model
7.3
Section 3 – Methodological Principles
References
Published with bookdown
Analysis of Common Agricultural Designs in R
References